Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008652.1_607_733_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

607 - 733

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAG

U12 Branch Point Sequence:

TGGTGCCCAGTG

Flanking Amino Acid:

LRAVLTTHHHWDHARGNEEL

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

81.4

30.6

Major BPS

43.3

-0.4

1.6

52.1

45.2

Major PPT

74.9

0.56

0.9

69.2

31.3

Minor 5ss

37.4

-1.4

3.3

49.4

41.4

Minor BPS

36.5

-1.1

2.2

41.03

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016519

Chromosome:

PEDO01008652.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039000

162 - 1065

904