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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008705.1_3778_3905_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3778 - 3905

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TAA|GCCAGCAGT

5'SS Class:

major

3'SS Sequence:

TAGGTGATGACAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTTTTAG

U12 Branch Point Sequence:

CTTTTTCTAGTT

Flanking Amino Acid:

PWMDACTNLGNNSHLQIPVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.2

69.8

40.6

Major BPS

54.8

0.12

1.7

57.4

49.1

Major PPT

0.16

1.2

50.5

46.8

Minor 5ss

27.9

-2.5

3.9

40.9

39.3

Minor BPS

49.3

0.02

1.9

71.49

40.5

Associated Gene:

Gene:

HESX1

Ensembl Gene ID:

ENSAPLG00000005083

Chromosome:

PEDO01008705.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005250

2133 - 4084

1952