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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008706.1_2560_2632_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2560 - 2632
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCCCCC
5'SS Class:
weak_major
3'SS Sequence:
CCCCCGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAA
U12 Branch Point Sequence:
TCGGGTTGAACG
Flanking Amino Acid:
LSAPTRQLFPDSSFPEDFSI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.3
43
44.6
Major BPS
54.3
0.11
1.3
49.1
46.3
Major PPT
67.4
0.39
0.9
59.7
35.5
Minor 5ss
44.1
-0.6
3.1
61
43.6
Minor BPS
44.4
-0.5
2
47.1
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017473
Chromosome:
PEDO01008706.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030486
490 - 2998
2509