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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008716.1_585_687_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
585 - 687
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CCCCGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACCC
Flanking Amino Acid:
MGTSRFLTGKEEEPGPWYNL
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
71.8
0.49
0.8
64.6
30.9
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
48.5
-0.1
1.9
58.45
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008319
Chromosome:
PEDO01008716.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008654
21 - 2747
2727