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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008765.1_1029_1467_R

Intron Information:

Intron Rank:
137521
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1029 - 1467
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTATGCTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
ATTACTTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.4
54.7
41.1
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
50.8
0.03
2.4
58.9
46.2
Minor BPS
57.2
0.2
1.6
68.14
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021463
Chromosome:
PEDO01008765.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030271
21 - 1590
1570