Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008775.1_184_293_F

Intron Information:

Intron Rank:

143088

Intron Class:

major

Intron Phase:

Intron Coordinates:

184 - 293

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGGCTG

5'SS Class:

major

3'SS Sequence:

CTTCTTTGGTAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

AGGTGCTGATTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

47.3

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

63.2

0.3

1.2

70.8

38.9

Minor 5ss

-1.1

3.3

47.3

48.1

Minor BPS

41.7

-0.7

43.18

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027085

Chromosome:

PEDO01008775.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031967

157 - 1473

1317