Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008785.1_2546_2636_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2546 - 2636

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGGGGG

5'SS Class:

major

3'SS Sequence:

CTTCCCTCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAGCAC

U12 Branch Point Sequence:

GGCTCAGCACCT

Flanking Amino Acid:

KDKGIVVGIKVDKGVVPLAS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

44.1

Major BPS

46.4

-0.2

1.4

53.6

41.6

Major PPT

74.2

0.54

0.7

69.5

24.3

Minor 5ss

22.1

-3.2

3.4

28.8

43.7

Minor BPS

37.6

-0.8

2.4

54.88

46.3

Associated Gene:

Gene:

ALDOC

Ensembl Gene ID:

ENSAPLG00000028771

Chromosome:

PEDO01008785.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023476

472 - 2843

2372