Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008785.1_568_1023_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

568 - 1023

Intron Length:

456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAATGGG

5'SS Class:

major

3'SS Sequence:

CCTCTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

ATGGGCTGACGC

Flanking Amino Acid:

ATEEFVKRAEVNGLAALGKY

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

0.9

65.5

40.5

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

74.2

0.54

0.7

65.3

30.5

Minor 5ss

-2.8

31.5

42.8

Minor BPS

37.3

-0.9

2.2

44.73

43.7

Associated Gene:

Gene:

ALDOC

Ensembl Gene ID:

ENSAPLG00000028771

Chromosome:

PEDO01008785.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023476

472 - 2843

2372