Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008801.1_1463_3320_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1463 - 3320

Intron Length:

1858

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCCGGCCG

5'SS Class:

major

3'SS Sequence:

CTGTTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAA

U12 Branch Point Sequence:

TTTTGCTCTTCT

Flanking Amino Acid:

RQRVGSYEEFRDIVLASHLK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.9

0.28

1.4

47.1

Major BPS

55.4

0.13

1.2

59.5

Major PPT

76.3

0.59

0.9

69.7

36.7

Minor 5ss

25.4

-2.8

3.1

31.3

42.4

Minor BPS

38.2

-0.8

3.8

76.35

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018965

Chromosome:

PEDO01008801.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023783

21 - 6019

5999