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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008809.1_6685_7097_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6685 - 7097
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
GTTCCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
GTTCCTCCCACA
Flanking Amino Acid:
LALQITNLLTRSSGAP*
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.9
38.5
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
75.5
0.57
0.8
69
31.6
Minor 5ss
34.7
-1.7
3.2
48.2
47.4
Minor BPS
42.9
-0.5
2.1
58.77
40.6

Associated Gene:

Gene:
POLG
Ensembl Gene ID:
ENSAPLG00000004436
Chromosome:
PEDO01008809.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004576
6647 - 13391
6745