Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008824.1_3239_3341_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3239 - 3341

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

TCTCACCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

TCTGTCTCACCC

Flanking Amino Acid:

YINVVTHLFQFSLLTGLGSL

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

63.9

42.4

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

72.6

0.51

0.8

65.9

29.7

Minor 5ss

23.2

-3.1

3.2

28.7

43.7

Minor BPS

48.3

-0.1

1.9

61.43

44.4

Associated Gene:

Gene:

TMBIM6

Ensembl Gene ID:

ENSAPLG00000017808

Chromosome:

PEDO01008824.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041523

1497 - 4245

2749

ENSAPLT00000020689

2290 - 4245

1956