Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008824.1_3859_3942_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3859 - 3942

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

TCGCTCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

GGGGCCTGACTT

Flanking Amino Acid:

ARRRSFLYLGGFLLSGLTLM

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

65.9

40.1

Major BPS

51.1

0.03

1.2

39.9

Major PPT

0.43

65.4

36.2

Minor 5ss

24.4

-2.9

3.1

29.4

43.3

Minor BPS

-0.2

1.8

58.08

44.9

Associated Gene:

Gene:

TMBIM6

Ensembl Gene ID:

ENSAPLG00000017808

Chromosome:

PEDO01008824.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041523

1497 - 4245

2749

ENSAPLT00000020689

2290 - 4245

1956