Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008836.1_790_1109_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

790 - 1109

Intron Length:

320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGGGC

5'SS Class:

major

3'SS Sequence:

GTTTCTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCAGAT

U12 Branch Point Sequence:

TTTTCTCGCACG

Flanking Amino Acid:

AEEEESVFLRRCGLLLFYQH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

61.4

37.5

Major BPS

48.6

-0

1.2

44.1

39.6

Major PPT

81.7

0.71

0.9

73.1

42.1

Minor 5ss

22.7

-3.1

3.5

31.5

43.1

Minor BPS

47.1

-0.3

2.2

64.84

Associated Gene:

Gene:

CXorf56

Ensembl Gene ID:

ENSAPLG00000029514

Chromosome:

PEDO01008836.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025252

21 - 2847

2827