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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008839.1_5316_5398_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5316 - 5398
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCACC
5'SS Class:
major
3'SS Sequence:
TCCGCGTGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTCCCTTATTT
Flanking Amino Acid:
LLLHVEPKRKEHSEKKQRVR
Intron Amino Acid Position:
1426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
60.8
44.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
56.2
0.14
1.1
49
43.9
Minor 5ss
45.1
-0.5
2.9
62
42.4
Minor BPS
60.7
0.42
1.7
72.9
44.5

Associated Gene:

Gene:
KIAA0100
Ensembl Gene ID:
ENSAPLG00000003462
Chromosome:
PEDO01008839.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043249
2115 - 12393
10279
ENSAPLT00000041986
1978 - 12393
10416
ENSAPLT00000003589
2978 - 12393
9416