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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008839.1_8397_8472_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8397 - 8472
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TTTCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TCTTTCTCCACC
Flanking Amino Acid:
NLDINVRTASKYDDCCFLHL
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.2
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
77.5
0.62
0.8
70.3
35.3
Minor 5ss
39.3
-1.2
3
49
41.4
Minor BPS
54.7
0.13
2
69.77
42

Associated Gene:

Gene:
KIAA0100
Ensembl Gene ID:
ENSAPLG00000003462
Chromosome:
PEDO01008839.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043249
2115 - 12393
10279
ENSAPLT00000041986
1978 - 12393
10416
ENSAPLT00000003589
2978 - 12393
9416