Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008849.1_2807_3786_R

Intron Information:

Intron Rank:

153379

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2807 - 3786

Intron Length:

980

Sequence Information:

Terminal Dinucleotides:

GT-AA

5'SS Sequence:

CCG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGTCCCCAA|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

CTGTGCTCATTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

66.2

39.6

Major BPS

79.7

0.74

79.6

35.6

Major PPT

39.9

-0.5

3.1

52.4

36.7

Minor 5ss

30.5

-2.2

2.8

37.9

39.5

Minor BPS

42.4

-0.7

2.2

46.77

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029998

Chromosome:

PEDO01008849.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039251

21 - 3934

3914