About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008852.1_2559_3619_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2559 - 3619
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACGGTC
5'SS Class:
major
3'SS Sequence:
CTTCCCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGGGTCTCACGC
Flanking Amino Acid:
ACGTACQEPDEKPGTCPPVK
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
63.7
42.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
78.9
0.65
0.8
72.5
32.1
Minor 5ss
39.8
-1.1
3.7
59
45.9
Minor BPS
40.2
-0.7
2
46.12
43.1

Associated Gene:

Gene:
WFDC2
Ensembl Gene ID:
ENSAPLG00000000674
Chromosome:
PEDO01008852.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000647
2249 - 3771
1523