About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008852.1_5445_5559_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5445 - 5559
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCCA
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTGCAC
U12 Branch Point Sequence:
ACGCCGTGCACC
Flanking Amino Acid:
DVRACLLPATESPGYCPRAG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
63.4
42.7
Major BPS
45.1
-0.3
1.4
52.4
43.3
Major PPT
75.5
0.57
0.7
69.5
24.3
Minor 5ss
30
-2.3
3.4
39.7
45.8
Minor BPS
39.2
-0.8
2.4
46.73
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019882
Chromosome:
PEDO01008852.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019219
4964 - 7294
2331
ENSAPLT00000044480
4964 - 7294
2331
ENSAPLT00000034941
4964 - 7294
2331
ENSAPLT00000031899
4964 - 7294
2331