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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008862.1_925_1596_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
925 - 1596
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTGTCCTCACCC
Flanking Amino Acid:
IEKQLVNYLKHVKNQVSIDQ
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
88.4
0.86
0.7
83.9
24.2
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
61.8
0.35
1.9
74.56
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018055
Chromosome:
PEDO01008862.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018763
549 - 2966
2418