Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_2338_2419_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2338 - 2419

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

TGTCCCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

CTGTGGTGACCT

Flanking Amino Acid:

LLGTPQRSRTDLLLVDTEAA

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

44.6

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

75.8

0.58

0.8

69.4

31.1

Minor 5ss

38.3

-1.3

47.3

48.1

Minor BPS

39.5

-0.7

2.5

59.86

49.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030550

Chromosome:

PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029286

21 - 4377

4357