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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_3683_3762_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3683 - 3762
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
CTCCCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAC
U12 Branch Point Sequence:
GGCACCACACCA
Flanking Amino Acid:
ALLGTSDIPDWRYVSLGLPY
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.6
40
Major BPS
48.6
-0
1
54.6
31.2
Major PPT
74.2
0.54
0.7
68
25.7
Minor 5ss
30
-2.3
3.4
38.7
40.9
Minor BPS
40.5
-0.7
2
47.24
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030550
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029286
21 - 4377
4357