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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_4045_4122_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4045 - 4122
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGCCCACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
ACTGGCTGAGCA
Flanking Amino Acid:
RVLRARGVPTRLLWYPEGGH
Intron Amino Acid Position:
661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
65
0.34
0.9
54.8
35.4
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
43.6
-0.4
2.1
54.29
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030550
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029286
21 - 4377
4357