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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_4659_4728_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4659 - 4728
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGGAT
U12 Branch Point Sequence:
TTTGGCCCCACA
Flanking Amino Acid:
PLRSGVGACEGDYGGPLACL
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
44
-0.3
1.4
37
40.7
Major PPT
73
0.52
0.9
65.6
36.2
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
39.8
-0.8
2.5
59.96
45.8

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023491
3240 - 8393
5154
ENSAPLT00000021779
4406 - 8393
3988
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154