About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_5214_5288_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5214 - 5288
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
GTCCCCTACACC
Flanking Amino Acid:
ESHLVLLKLARPAVLNKRVA
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
50
0
1.5
63.1
44.5
Major PPT
79.9
0.67
0.8
73.6
31.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
48
-0.1
2.1
60.42
44.7

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023491
3240 - 8393
5154
ENSAPLT00000021779
4406 - 8393
3988
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154