Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_5578_5664_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5578 - 5664

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

CTGGTGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

CCCCCCTCATGC

Flanking Amino Acid:

NSPWTVSIRNRAGVHFCGGS

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

0.5

1.1

71.2

35.2

Major PPT

69.7

0.44

39.9

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

40.9

-0.7

43.26

44.3

Associated Gene:

Gene:

MST1

Ensembl Gene ID:

ENSAPLG00000004404

Chromosome:

PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023491

3240 - 8393

5154

ENSAPLT00000021779

4406 - 8393

3988

ENSAPLT00000028865

3240 - 8393

5154