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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_5886_5974_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5886 - 5974
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
GTTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAC
U12 Branch Point Sequence:
GCTGCAGCCACC
Flanking Amino Acid:
PFDYCAIKPCSGNAVPSILE
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.1
50.1
40.9
Major BPS
44.9
-0.3
1.4
49.9
45.3
Major PPT
78.7
0.65
0.8
73.3
31.6
Minor 5ss
36.6
-1.5
3.1
53.3
43.4
Minor BPS
34
-1.2
2.5
44
43.7

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154
ENSAPLT00000023491
3240 - 8393
5154
ENSAPLT00000021779
4406 - 8393
3988