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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_6506_6583_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6506 - 6583
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
GCTGCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGCAC
U12 Branch Point Sequence:
GGGCACGCAGCC
Flanking Amino Acid:
HHFVPEKYPCKDLQENYCRN
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.9
41.1
Major BPS
44
-0.3
1.5
48.8
46.3
Major PPT
65.7
0.35
1.1
57.7
43.2
Minor 5ss
36.6
-1.5
3.6
48.4
42.2
Minor BPS
34.1
-1.2
2.1
39.12
38.8

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154
ENSAPLT00000023491
3240 - 8393
5154
ENSAPLT00000021779
4406 - 8393
3988