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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_6946_7025_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6946 - 7025
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACCGGCC
5'SS Class:
weak_major
3'SS Sequence:
GTCTCTCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCACCCTCACCC
Flanking Amino Acid:
HPHKHPYHPDKYPEKGLDDN
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.3
0.13
1.2
54.5
38.7
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
69.2
0.43
1
61.3
40.1
Minor 5ss
36.7
-1.5
3.8
50.1
41
Minor BPS
49.5
-0
1.9
61.11
43.8

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023491
3240 - 8393
5154
ENSAPLT00000021779
4406 - 8393
3988
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154