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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008866.1_7147_7222_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7147 - 7222
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CCGCTGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
GTCCCCGCCACC
Flanking Amino Acid:
QSCGIKKCQDAICMTCNGED
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
64.7
0.33
1.1
60.2
40.4
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
40.6
-0.7
2.4
52.77
44.6

Associated Gene:

Gene:
MST1
Ensembl Gene ID:
ENSAPLG00000004404
Chromosome:
PEDO01008866.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021779
4406 - 8393
3988
ENSAPLT00000004530
4406 - 8393
3988
ENSAPLT00000028865
3240 - 8393
5154
ENSAPLT00000023491
3240 - 8393
5154