Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008905.1_1327_1417_R

Intron Information:

Intron Rank:

149762

Intron Class:

major

Intron Phase:

Intron Coordinates:

1327 - 1417

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTTATCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TTTTTGTTATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.1

38.2

Major BPS

73.8

0.59

0.9

26.8

Major PPT

75.6

0.58

0.9

67.1

40.1

Minor 5ss

28.6

-2.5

3.5

46.8

Minor BPS

57.5

0.21

2.3

77.51

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028133

Chromosome:

PEDO01008905.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042635

390 - 1763

1374