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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008913.1_415_565_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
415 - 565
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCATGTTGC
5'SS Class:
weak_major
3'SS Sequence:
CTCAGACTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTGCTCTTAAGA
Flanking Amino Acid:
KLKVKTFFWGKLLFSFPKVT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.5
56.9
44.6
Major BPS
69.9
0.49
1
61.3
37
Major PPT
65.8
0.36
0.9
57.7
37.5
Minor 5ss
38.3
-1.3
3.9
52.4
44.9
Minor BPS
63.9
0.43
1.6
72.13
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028648
Chromosome:
PEDO01008913.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036028
94 - 637
544