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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008921.1_2414_2522_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2414 - 2522
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CACCTCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GCCACCTCCACC
Flanking Amino Acid:
GRHRGAAPTKGDSGSPLVCG
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
63.4
0.3
0.9
54.2
35.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.7
-0.3
2
51.91
45

Associated Gene:

Gene:
GZMM
Ensembl Gene ID:
ENSAPLG00000030871
Chromosome:
PEDO01008921.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037908
683 - 2720
2038