Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008930.1_1660_1928_F

Intron Information:

Intron Rank:

134194

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1660 - 1928

Intron Length:

269

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GGG|GTCACTGAG

5'SS Class:

weak_major

3'SS Sequence:

GTGGGGCTGTCGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

GTCATCAGGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.7

0.16

1.5

54.1

45.2

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

34.2

-0.9

3.1

42.8

47.5

Minor 5ss

32.5

-2

32.2

42.3

Minor BPS

44.1

-0.4

1.7

53.34

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022112

Chromosome:

PEDO01008930.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022124

1007 - 2293

1287