Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008998.1_1619_1726_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1619 - 1726

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGCGCTGC

5'SS Class:

major

3'SS Sequence:

TGTCTGTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CGACCCCTCACA

Flanking Amino Acid:

AWLKDKGFSRITVRCLGVLS

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.3

0.29

1.1

53.3

40.8

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

74.2

0.54

0.9

65.4

41.1

Minor 5ss

40.1

-1.1

3.3

53.6

44.2

Minor BPS

45.8

-0.3

2.1

55.46

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016827

Chromosome:

PEDO01008998.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024680

1357 - 3609

2253