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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009026.1_1426_2913_F

Intron Information:

Intron Rank:
134729
Intron Class:
major
Intron Phase:
Intron Coordinates:
1426 - 2913
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
GCGAGTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
66.4
40.8
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
29.2
-2.4
3.1
36.8
40.3
Minor BPS
51.2
0.12
1.8
64.81
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022449
Chromosome:
PEDO01009026.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047841
592 - 3311
2720