Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009078.1_3309_3466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3309 - 3466

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CGGCCGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAG

U12 Branch Point Sequence:

CCGGCCGTCCCC

Flanking Amino Acid:

ILASLGGSLTGALLRTRALR

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

78.3

32.5

Major BPS

47.4

-0.1

1.6

54.7

43.1

Major PPT

60.3

0.23

49.6

39.3

Minor 5ss

38.9

-1.3

2.9

44.3

43.6

Minor BPS

-1.7

3.7

40.47

46.1

Associated Gene:

Gene:

RHBG

Ensembl Gene ID:

ENSAPLG00000007264

Chromosome:

PEDO01009078.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007533

1309 - 3551

2243