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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009107.1_717_1062_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
717 - 1062
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGCTTTGAAG
Flanking Amino Acid:
VVRLDGRNFHRFAEQHEFKK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.3
0.64
1
79.4
32.9
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
59.9
0.17
1.6
67.24
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021990
Chromosome:
PEDO01009107.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030377
333 - 1560
1228