Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009123.1_3397_4931_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3397 - 4931

Intron Length:

1535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTTCCAT

5'SS Class:

major

3'SS Sequence:

TGTGAGGGAGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TATCTGTGAACA

Flanking Amino Acid:

PASPMSPVLPEAWKDGR*

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

59.5

40.9

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

45.6

-0.2

1.2

38.2

43.4

Minor 5ss

40.2

-1.1

3.1

55.9

48.3

Minor BPS

49.1

-0

2.1

66.8

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019302

Chromosome:

PEDO01009123.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040198

2814 - 4954

2141