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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009123.1_429_2939_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
429 - 2939
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGGGTGGG
5'SS Class:
weak_major
3'SS Sequence:
TGTGGGGTATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ATACACTGATGT
Flanking Amino Acid:
ARNVGDPRGPPTQHGWGEGV
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.4
45.3
44.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
59.1
0.21
1.2
54.9
48.7
Minor 5ss
27.1
-2.6
3.3
34.6
42
Minor BPS
42
-0.5
2
59.18
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023580
Chromosome:
PEDO01009123.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033698
47 - 3531
3485