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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009129.1_5468_5655_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5468 - 5655
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGAA
5'SS Class:
major
3'SS Sequence:
CTCCCTGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGCAC
U12 Branch Point Sequence:
CGGCCAACAGCT
Flanking Amino Acid:
PPVSTSDREKFEQILGSELA
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.5
35.9
Major BPS
43
-0.4
1.5
48.8
46.3
Major PPT
74.6
0.55
0.8
68.4
31.8
Minor 5ss
22
-3.2
3.4
28.1
44
Minor BPS
36.5
-0.9
2
49.19
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024688
Chromosome:
PEDO01009129.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041369
4434 - 9483
5050