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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009144.1_547_2497_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
547 - 2497
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTGCTGAT
5'SS Class:
weak_major
3'SS Sequence:
CAACCTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCACAA
U12 Branch Point Sequence:
GCGTGCACAACT
Flanking Amino Acid:
FLRPLLPGRCVPHHL*
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.3
57.1
42
Major BPS
53.3
0.08
1.1
61
37.5
Major PPT
67.7
0.4
1
57.4
42.7
Minor 5ss
35
-1.7
3.4
46.3
43.6
Minor BPS
44.6
-0.3
2.2
61.87
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023956
Chromosome:
PEDO01009144.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048231
21 - 2514
2494