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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009166.1_1411_2138_F

Intron Information:

Intron Rank:
134473
Intron Class:
major
Intron Phase:
Intron Coordinates:
1411 - 2138
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTCACCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
75.9
0.58
0.9
72.9
37.4
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
68.5
0.66
1.5
81.72
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022274
Chromosome:
PEDO01009166.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036885
21 - 2282
2262
ENSAPLT00000034632
21 - 2282
2262