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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009169.1_286_948_F

Intron Information:

Intron Rank:
147516
Intron Class:
major
Intron Phase:
Intron Coordinates:
286 - 948
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
CTGCCCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
59
0.22
1
66.7
30
Major PPT
74.8
0.56
0.8
66.2
35.2
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
45
-0.4
1.9
53.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029445
Chromosome:
PEDO01009169.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035022
21 - 1702
1682