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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009200.1_816_1382_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
816 - 1382
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
CCTTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGGGCACTGATG
Flanking Amino Acid:
KFKNRGKDAAALRRQRVEVQ
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78.2
0.63
0.7
72.8
25.4
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
41.5
-0.8
2
44.89
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028064
Chromosome:
PEDO01009200.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020688
61 - 1457
1397