About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009219.1_2900_2990_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2900 - 2990
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TCCCCTCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CCTGTCTCAGGC
Flanking Amino Acid:
VVLGVPENRLQPTHPVYNIH
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
68.9
0.43
0.9
65
30.6
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
40.3
-0.7
2
45.1
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028703
Chromosome:
PEDO01009219.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025527
458 - 3092
2635