Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009219.1_697_945_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

697 - 945

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCGGGC

5'SS Class:

major

3'SS Sequence:

CCTGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCCCAG

U12 Branch Point Sequence:

GCCGGCCCAGCT

Flanking Amino Acid:

GLRQLSEAYECLDASRPWLC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.3

56.6

42.5

Major BPS

36.4

-0.8

1.6

37.9

43.6

Major PPT

0.5

0.8

65.4

30.4

Minor 5ss

-1.8

3.8

50.3

46.3

Minor BPS

34.1

-1.1

2.1

45.17

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028703

Chromosome:

PEDO01009219.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025527

458 - 3092

2635

ENSAPLT00000034454

458 - 2819

2362

ENSAPLT00000027999

458 - 6143

5686