Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009220.1_2389_3062_R

Intron Information:

Intron Rank:

149047

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2389 - 3062

Intron Length:

674

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

GGG|GTTTCTATA

5'SS Class:

weak_major

3'SS Sequence:

CTATAGGATTTTG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

GTTTCCATAGGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.3

0.13

1.3

62.7

43.2

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

35.8

-0.8

3.1

47.4

44.7

Minor 5ss

46.9

-0.3

2.2

52.6

44.3

Minor BPS

49.7

-0

2.1

69.37

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027663

Chromosome:

PEDO01009220.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036601

1366 - 3277

1912