Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009230.1_951_1288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

951 - 1288

Intron Length:

338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGAGC

5'SS Class:

major

3'SS Sequence:

ATTTAATTCATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GTATATTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

38.8

Major BPS

90.7

1.01

0.7

19.9

Major PPT

72.4

0.5

0.9

66.3

38.9

Minor 5ss

31.2

-2.1

3.4

42.5

44.6

Minor BPS

0.61

1.4

78.65

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021139

Chromosome:

PEDO01009230.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036225

21 - 4392

4372

ENSAPLT00000020555

21 - 3999

3979

ENSAPLT00000017455

21 - 3999

3979