Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_156_371_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

156 - 371

Intron Length:

216

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGTG

5'SS Class:

major

3'SS Sequence:

GCTCTGTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

ACGGCCTGACTC

Flanking Amino Acid:

HAFSPSLADTDVSPMDAVSA

Intron Amino Acid Position:

1235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

68.1

40.5

Major BPS

51.1

0.03

1.2

39.9

Major PPT

70.5

0.46

0.9

61.1

40.1

Minor 5ss

31.4

-2.1

3.9

45.4

49.7

Minor BPS

45.1

-0.3

1.8

48.81

41.9

Associated Gene:

Gene:

NAV1

Ensembl Gene ID:

ENSAPLG00000023628

Chromosome:

PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032221

58 - 22627

22570