Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009234.1_3462_3604_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3462 - 3604

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTGCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGGGAC

U12 Branch Point Sequence:

ACGCGCTGCAGG

Flanking Amino Acid:

RHLAETAEEKDTELLDLRET

Intron Amino Acid Position:

746

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.8

72.1

31.2

Major BPS

42.6

-0.4

1.5

34.5

43.7

Major PPT

79.8

0.67

0.8

73.5

31.5

Minor 5ss

26.3

-2.7

3.1

33.4

Minor BPS

33.4

-1.4

2.2

31.37

Associated Gene:

Gene:

NAV1

Ensembl Gene ID:

ENSAPLG00000023628

Chromosome:

PEDO01009234.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032221

58 - 22627

22570

ENSAPLT00000030141

286 - 11213

10928